refactor: Update Doxyfile and resource paths for improved organization

- Changed the paths for project logo and icon in Doxyfile to point to the new assets directory.
- Updated CMake configurations to reflect the new locations of resource files, enhancing clarity and maintainability.
- Replaced instances of core utility functions with util functions across various files for consistency in file handling.
- Added new resource files for Windows platform support and removed obsolete resource files, streamlining the build process.

Doxyfile

@@ -61,13 +61,13 @@ PROJECT_BRIEF          = Link to the Past ROM Editor
 # pixels and the maximum width should not exceed 200 pixels. Doxygen will copy
 # the logo to the output directory.
 
-PROJECT_LOGO           = "src/win32/yaze.ico"
+PROJECT_LOGO           = "assets/yaze.ico"
 
 # With the PROJECT_ICON tag one can specify an icon that is included in the tabs
 # when the HTML document is shown. Doxygen will copy the logo to the output
 # directory.
 
-PROJECT_ICON           = "src/win32/yaze.ico"
+PROJECT_ICON           = "assets/yaze.ico"
 
 # The OUTPUT_DIRECTORY tag is used to specify the (relative or absolute) path
 # into which the generated documentation will be written. If a relative path is

src/CMakeLists.txt

@@ -456,8 +456,8 @@ else()
     # Only use resource file for x64 Windows builds
     if(WIN32 AND CMAKE_SIZEOF_VOID_P EQUAL 8)
       # Generate yaze.res from yaze.rc and yaze.ico for Windows x64 builds
-      set(YAZE_RC_FILE "${CMAKE_CURRENT_SOURCE_DIR}/win32/yaze.rc")
-      set(YAZE_ICO_FILE "${CMAKE_CURRENT_SOURCE_DIR}/win32/yaze.ico")
+      set(YAZE_RC_FILE "${CMAKE_CURRENT_SOURCE_DIR}/app/platform/win32/yaze.rc")
+      set(YAZE_ICO_FILE "${CMAKE_SOURCE_DIR}/assets/yaze.ico")
       set(YAZE_RES_FILE "${CMAKE_CURRENT_BINARY_DIR}/yaze.res")
 
       # Add a custom command to generate the .res file from the .rc and .ico
@@ -1076,9 +1076,7 @@ source_group("API\\Python" FILES
 
 # Platform-specific Resources
 source_group("Platform\\Windows" FILES
-  win32/yaze.ico
-  win32/yaze.rc
-  win32/yaze.res
+  app/platform/win32/yaze.rc
 )
 
 source_group("Platform\\iOS" FILES

src/app/editor/agent/agent_chat_widget.cc

@@ -1649,7 +1649,7 @@ void AgentChatWidget::RenderSystemPromptEditor() {
   // Toolbar
   if (ImGui::Button(ICON_MD_FOLDER_OPEN " Load V1")) {
     // Load embedded system_prompt.txt (v1)
-    std::string prompt_v1 = core::LoadFile("assets/agent/system_prompt.txt");
+    std::string prompt_v1 = util::LoadFile("assets/agent/system_prompt.txt");
     if (!prompt_v1.empty()) {
       // Find or create system prompt tab
       bool found = false;
@@ -1685,7 +1685,7 @@ void AgentChatWidget::RenderSystemPromptEditor() {
   ImGui::SameLine();
   if (ImGui::Button(ICON_MD_FOLDER_OPEN " Load V2")) {
     // Load embedded system_prompt_v2.txt
-    std::string prompt_v2 = core::LoadFile("assets/agent/system_prompt_v2.txt");
+    std::string prompt_v2 = util::LoadFile("assets/agent/system_prompt_v2.txt");
     if (!prompt_v2.empty()) {
       // Find or create system prompt tab
       bool found = false;
@@ -1730,7 +1730,7 @@ void AgentChatWidget::RenderSystemPromptEditor() {
           if (file.is_open()) {
             file << tab.editor.GetText();
             tab.filepath = save_path;
-            tab.filename = core::GetFileName(save_path);
+            tab.filename = util::GetFileName(save_path);
             tab.modified = false;
             if (toast_manager_) {
               toast_manager_->Show(absl::StrFormat("System prompt saved to %s", save_path), 
@@ -1771,7 +1771,7 @@ void AgentChatWidget::RenderSystemPromptEditor() {
             buffer << file.rdbuf();
             tab.editor.SetText(buffer.str());
             tab.filepath = filepath;
-            tab.filename = core::GetFileName(filepath);
+            tab.filename = util::GetFileName(filepath);
             tab.modified = false;
             found = true;
             break;
@@ -1780,7 +1780,7 @@ void AgentChatWidget::RenderSystemPromptEditor() {
         
         if (!found) {
           FileEditorTab tab;
-          tab.filename = core::GetFileName(filepath);
+          tab.filename = util::GetFileName(filepath);
           tab.filepath = filepath;
           tab.is_system_prompt = true;
           tab.editor.SetLanguageDefinition(TextEditor::LanguageDefinition::CPlusPlus());
@@ -2042,7 +2042,7 @@ void AgentChatWidget::LoadAgentSettingsFromProject(const core::YazeProject& proj
           buffer << file.rdbuf();
           tab.editor.SetText(buffer.str());
           tab.filepath = prompt_path;
-          tab.filename = core::GetFileName(prompt_path);
+          tab.filename = util::GetFileName(prompt_path);
           found = true;
           break;
         }
@@ -2050,7 +2050,7 @@ void AgentChatWidget::LoadAgentSettingsFromProject(const core::YazeProject& proj
       
       if (!found) {
         FileEditorTab tab;
-        tab.filename = core::GetFileName(prompt_path);
+        tab.filename = util::GetFileName(prompt_path);
         tab.filepath = prompt_path;
         tab.is_system_prompt = true;
         tab.editor.SetLanguageDefinition(TextEditor::LanguageDefinition::CPlusPlus());

src/app/editor/editor_manager.cc

@@ -76,7 +76,7 @@ std::string GetEditorName(EditorType type) {
 // Settings + preset helpers
 void EditorManager::LoadUserSettings() {
   try {
-    auto data = core::LoadConfigFile(settings_filename_);
+    auto data = util::LoadConfigFile(settings_filename_);
     if (!data.empty()) {
       std::istringstream ss(data);
       std::string line;
@@ -103,7 +103,7 @@ void EditorManager::SaveUserSettings() {
   ss << "font_global_scale=" << font_global_scale_ << "\n";
   ss << "autosave_enabled=" << (autosave_enabled_ ? 1 : 0) << "\n";
   ss << "autosave_interval_secs=" << autosave_interval_secs_ << "\n";
-  core::SaveFile(settings_filename_, ss.str());
+  util::SaveFile(settings_filename_, ss.str());
 }
 
 void EditorManager::RefreshWorkspacePresets() {
@@ -114,7 +114,7 @@ void EditorManager::RefreshWorkspacePresets() {
 
     // Try to read a simple index file of presets
     try {
-      auto data = core::LoadConfigFile("workspace_presets.txt");
+      auto data = util::LoadConfigFile("workspace_presets.txt");
       if (!data.empty()) {
         std::istringstream ss(data);
         std::string name;
@@ -164,7 +164,7 @@ void EditorManager::SaveWorkspacePreset(const std::string& name) {
       std::ostringstream ss;
       for (const auto& n : workspace_presets_)
         ss << n << "\n";
-      core::SaveFile("workspace_presets.txt", ss.str());
+      util::SaveFile("workspace_presets.txt", ss.str());
     } catch (const std::exception& e) {
       LOG_WARN("EditorManager", "Failed to save workspace presets: %s", e.what());
     }
@@ -1454,7 +1454,7 @@ void EditorManager::DrawMenuBar() {
 
               ImGui::TableNextRow();
               ImGui::TableNextColumn();
-              ImGui::Text("%s", core::GetFileName(file).c_str());
+              ImGui::Text("%s", util::GetFileName(file).c_str());
 
               ImGui::TableNextColumn();
               std::string ext = core::GetFileExtension(file);

src/app/gui/theme_manager.cc

@@ -263,7 +263,7 @@ absl::Status ThemeManager::LoadThemeFromFile(const std::string& filepath) {
     filepath,                                    // Absolute path
     "assets/themes/" + filepath,                 // Relative from build dir  
     "../assets/themes/" + filepath,              // Relative from bin dir
-    core::GetResourcePath("assets/themes/" + filepath), // Platform-specific resource path
+    util::GetResourcePath("assets/themes/" + filepath), // Platform-specific resource path
   };
   
   std::ifstream file;
@@ -1898,13 +1898,13 @@ std::vector<std::string> ThemeManager::GetThemeSearchPaths() const {
   // Platform-specific resource paths
 #ifdef __APPLE__
   // macOS bundle resource path (this should be the primary path for bundled apps)
-  std::string bundle_themes = core::GetResourcePath("assets/themes/");
+  std::string bundle_themes = util::GetResourcePath("assets/themes/");
   if (!bundle_themes.empty()) {
     search_paths.push_back(bundle_themes);
   }
   
   // Alternative bundle locations
-  std::string bundle_root = core::GetBundleResourcePath();
+  std::string bundle_root = util::GetBundleResourcePath();
   
   search_paths.push_back(bundle_root + "Contents/Resources/themes/");
   search_paths.push_back(bundle_root + "Contents/Resources/assets/themes/");
@@ -1917,7 +1917,7 @@ std::vector<std::string> ThemeManager::GetThemeSearchPaths() const {
 #endif
   
   // User config directory
-  std::string config_themes = core::GetConfigDirectory() + "/themes/";
+  std::string config_themes = util::GetConfigDirectory() + "/themes/";
   search_paths.push_back(config_themes);
   
   return search_paths;

src/cli/handlers/project.cc

@@ -52,7 +52,7 @@ absl::Status ProjectBuild::Run(const std::vector<std::string>& arg_vec) {
   for (unsigned int i = 0; i < glob_result.gl_pathc; ++i) {
     std::string patch_file = glob_result.gl_pathv[i];
     std::vector<uint8_t> patch_data;
-    auto patch_contents = core::LoadFile(patch_file);
+    auto patch_contents = util::LoadFile(patch_file);
     std::copy(patch_contents.begin(), patch_contents.end(),
               std::back_inserter(patch_data));
     std::vector<uint8_t> patched_rom;

src/cli/tui.cc

@@ -64,11 +64,11 @@ void ApplyBpsPatchComponent(ftxui::ScreenInteractive &screen) {
   // Button to apply the patch.
   auto apply_button = Button("Apply Patch", [&] {
     std::vector<uint8_t> source = app_context.rom.vector();
-    // auto source_contents = core::LoadFile(base_file);
+    // auto source_contents = util::LoadFile(base_file);
     // std::copy(source_contents.begin(), source_contents.end(),
     //           std::back_inserter(source));
     std::vector<uint8_t> patch;
-    auto patch_contents = core::LoadFile(patch_file);
+    auto patch_contents = util::LoadFile(patch_file);
     std::copy(patch_contents.begin(), patch_contents.end(),
               std::back_inserter(patch));
     std::vector<uint8_t> patched;